STRINGSTRING
Pnap_2110 Pnap_2110 Pnap_2109 Pnap_2109 Pnap_2111 Pnap_2111 Pnap_2112 Pnap_2112 Pnap_0825 Pnap_0825 Pnap_2948 Pnap_2948 Pnap_0684 Pnap_0684 Pnap_4019 Pnap_4019 Pnap_0610 Pnap_0610 Pnap_1022 Pnap_1022 Pnap_3835 Pnap_3835
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Pnap_2110Toluate 1,2-dioxygenase electron transfer component; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pfl:PFL_3856 ring-hydroxylating dioxygenase, ferredoxin reductase subunit. (335 aa)    
Predicted Functional Partners:
Pnap_2109
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pen:PSEEN3140 cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase,(cis-1,2-dihydroxy-3, 4-cyclohexadiene-1-carboxylate dehydrogenase) (2-hydro-1,2-dihydroxybenzoate dehydrogenase) (DHB dehydrogenase); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 0.999
Pnap_2111
2-chlorobenzoate 1,2-dioxygenase; PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: cgb:cg2638 benzoate dioxygenase small subunit.
 
 
 0.996
Pnap_2112
PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: rme:Rmet_4882 Rieske (2Fe-2S) region.
 
 
 0.995
Pnap_0825
NAD-dependent formate dehydrogenase flavoprotein subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone).
  
 
 0.929
Pnap_2948
TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_1624 benzoate-CoA ligase family.
   
 
 0.914
Pnap_0684
TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_0792 glutamate synthases, NADH/NADPH, small subunit.
  
 0.910
Pnap_4019
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ret:RHE_CH03277 probable NADPH-dependent glutamate synthase small chain protein.
  
 0.910
Pnap_0610
PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
 0.908
Pnap_1022
PFAM: aldehyde dehydrogenase; KEGG: bja:blr6417 vanillin: NAD oxidoreductase; Belongs to the aldehyde dehydrogenase family.
  
 0.908
Pnap_3835
PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
 0.908
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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